PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000045.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 626aa    MW: 68894.5 Da    PI: 5.2634
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000045.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.27.4e-41241511128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lppG+rF+Ptd el+ +yLkkkv +++++l + ik+++iyk++P+dL +   + a+eke yfF++rdkky++g r+ r++ +g+Wk
  Itr_sc000045.1_g00004.1  24 LPPGIRFRPTDGELM-DYLKKKVLKERMPL-HRIKTCNIYKYHPNDLCRpdDL-AREKESYFFTSRDKKYPNGARPDRKAGDGFWK 106
                              79*************.**************.77**************532243.5789**************************** PP

                      NAM  85 atgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128
                              atg+d ++ + kg++vg kktLv+y+g++++ +  kt+W+mhey++
  Itr_sc000045.1_g00004.1 107 ATGRDMPISC-KGAVVGSKKTLVYYEGKHKDVSlhKTNWIMHEYTI 151
                              **********.999***********8866654334*********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-4122186IPR003441NAC domain
PROSITE profilePS5100540.78824187IPR003441NAC domain
PfamPF023651.1E-2025151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MEKEEATLAM EVEKGLSDRY FKSLPPGIRF RPTDGELMDY LKKKVLKERM PLHRIKTCNI  60
YKYHPNDLCR PDDLAREKES YFFTSRDKKY PNGARPDRKA GDGFWKATGR DMPISCKGAV  120
VGSKKTLVYY EGKHKDVSLH KTNWIMHEYT INPNIKITPV AQGQSDNNNN NDNNILDECV  180
LAKIYEKTTG SKKGADNNCS PSQDDTQQIL DSEQIPPEEQ DNPILEPQEY PTAEQVAPPP  240
PQNQNHQNPM AGATGGGGYN TNMIILQGSE QLPLPPPEAQ NNPILEPQQY SRAIHMGSLT  300
GPNNEIRAQN NPILEPQQYS RATHMGSLTG PNSEVRAQNN PILEPQQYPM ATRIDSLTGS  360
MGGVRVQNNP ILEPQQYPMA TRMGSLIGPN NEIRAQNPIL KPQQHPTANR MDSLTGPKGE  420
VGTQNNPIPK PQQYPTTTHM NNLTGHNGEI LKEDYSTALQ AAAAAAAASY PNHQNPIAGA  480
AAAAAYHRYM MIPVSEQPPL PPPEAQENPI LEQVAELPPF PYQENPMDVA AAAAATFYSW  540
DAGSYGYESL QTDENFYGIN SGAFSFEENN NGFWGSLNGG LEDVVNMYIG NNVNNPSANP  600
HGQANNAGDN VNPSHNPHGP ANVSDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-342319316171NO APICAL MERISTEM PROTEIN
1ut4_B6e-342319316171NO APICAL MERISTEM PROTEIN
1ut7_A6e-342319316171NO APICAL MERISTEM PROTEIN
1ut7_B6e-342319316171NO APICAL MERISTEM PROTEIN
3swm_A7e-342319319174NAC domain-containing protein 19
3swm_B7e-342319319174NAC domain-containing protein 19
3swm_C7e-342319319174NAC domain-containing protein 19
3swm_D7e-342319319174NAC domain-containing protein 19
3swp_A7e-342319319174NAC domain-containing protein 19
3swp_B7e-342319319174NAC domain-containing protein 19
3swp_C7e-342319319174NAC domain-containing protein 19
3swp_D7e-342319319174NAC domain-containing protein 19
4dul_A6e-342319316171NAC domain-containing protein 19
4dul_B6e-342319316171NAC domain-containing protein 19
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-38NAC family protein